Data processing scripts for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.
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Updated
Jun 11, 2024 - Python
Data processing scripts for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.
TrIdent- Transduction Identification: Automatic detection, classification and characterization of active transduction events in microbiomes.
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
Reconstruction and analysis of viral and host genomes at multi-organ level
An analysis and visualization platform for 'omics data
A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis
Assembly and binning of metagenomes
A collection of Galaxy-related training material
This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.
The website showcases Arun Boddapati's professional portfolio, emphasizing his expertise as a bioinformatics scientist and machine learning expert.
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis
Lightweight bioinformatics pipeline for microbial genome recovery
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.
Repository for the presentation of work developed by the student Duarte Velho for the UC Project, of the Master in Bioinformatics of the University of Minho, academic year 23-24.
Meta domains are a new type of digital currency that has caused a lot of discussion about whether they are just a passing fad or the next big thing, like Bitcoins.
A reconfigurable machine learning pipeline for labeling ORFs/proteins in bacteriophage genomes and metagenomic data.
TAXnomic Profile Aggregation and STAndardisation
AMR/VF LGT focused bacterial genomics analysis workflow
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
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