Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
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Updated
Jun 10, 2024 - Shell
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
Papers in which I have been involved as data scientist. For the title, info and and/or the DOI of each one of them, check the corrispective "Paper_title_and_info" txt file
Package for processing and analyzing glycans and their role in biology.
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The cryoSPARC platform enables automated, high quality and high-throughput structure discovery of proteins, viruses and molecular complexes for research and drug discovery.
A collection of tools to analyse biophysical data. Written mostly in R and Python.
A Go package for designing DNA.
Code used to plot the figures in "Extensive folding variability between homologous chromosomes in mammalian cells"
Python library that enables scripting access to CryoSPARC, a cryo-EM software package.
An introduction to Genomic Data Science/Bioinformatics.
Image-processing software for cryo-electron microscopy
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
This repository contains everything needed to replicate the data analyses and plots used in J. L. Loveland, A. Zemella et al., A single gene orchestrates androgen regulation underlying alternative mating morphs (2024)
A Go package for engineering organisms.
A curated list of FREE courses available online from top universities of the world on Computational Biology and Bioinformatics.
A Panel progressive web app for synonymous recoding of viral genomes with CpG dinucleotides
ColabSeq: The one-stop shop for all of your multiple sequence analysis needs.
Multiview Intercellular SpaTial modeling framework
nanoDNA-nanoROBOT-simulation: Open-source Python project for modeling and simulating DNA-based nanorobot behavior. 🧬🤖
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