QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
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Updated
Jun 6, 2024 - Python
QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
A Go package for designing DNA.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
A Go package for engineering organisms.
A simple python plasmid map creator
Bacterial plasmid annotation pipeline
An unofficial API for Addgene, the open-source plasmid repository.
a DNA assembly library
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
An ensemble of plasmid classification tools
Plasmid assembly, gene identification and annotation pipeline
Modular cloning simulation with the MoClo framework in Python
Software for prediction of plasmid sequences in metagenomic assemblies
Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
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