Skip to content

Issues: jtamames/SqueezeMeta

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

27 Open 772 Closed
27 Open 772 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

antimicrobial function SQMlite
#851 opened Jun 10, 2024 by inej90
Ways to speed up runtime
#850 opened Jun 10, 2024 by Vincev454
Metadata connections SQMtools
#849 opened Jun 7, 2024 by inej90
1
Stopping in STEP5
#847 opened Jun 5, 2024 by guianrey
4
Stopping in STEP1 -> 01.run_all_assemblies.pl. Program finished abnormally
#844 opened May 23, 2024 by AntonioPuriel
4
Understanding KEGG pathways output
#843 opened May 22, 2024 by da-shanmugapriya
3
Stopping in STEP10 -> 10.mapsamples.pl. Program finished abnormally Line no 18
#842 opened May 19, 2024 by vmevada102
4
Issue with SQMtools
#840 opened May 10, 2024 by mradz19
9
SQMtools run in R
#839 opened May 6, 2024 by AntonioPuriel
3
loadSQM does not let me load the project
#837 opened May 3, 2024 by inej90
1
Assembly error
#831 opened Apr 25, 2024 by abhirajnair2002
11
unable to down load databases
#830 opened Apr 23, 2024 by zuriashm
2
SQM_LONGREADS.PL died at line 933
#828 opened Apr 19, 2024 by inej90
1
Workflow, tool version outline enhancement New feature or request
#825 opened Apr 11, 2024 by s-junguy
7
How to use data obtained from other software to start from the middle of the steps of SqueezeMeta and run the subsequent steps?
#821 opened Mar 29, 2024 by mojiefei
4
External database - CAZy Annotations missing.
#819 opened Mar 26, 2024 by da-shanmugapriya
7
"zip file is corrupt" when loading a zipped project into SQMtools bug Something isn't working SQMtools
#755 opened Nov 19, 2023 by fpusan
1
The "tax" parameter of the "subsetTax" function could accept list of taxons enhancement New feature or request SQMtools
#749 opened Nov 9, 2023 by glenjasper
3
Add the taxonomic category "Kingdom" for eukaryotes enhancement New feature or request Taxonomic annotation
#747 opened Nov 8, 2023 by glenjasper
4
Using dedupe.sh to identify and remove contigs contained in others (merged mode) Assembly enhancement New feature or request merged mode seqmerge mode
#701 opened Jun 26, 2023 by eperezv
2
sqm_longreads yields wrong mcount table bug Something isn't working sqm_longreads SQM_reads
#686 opened May 19, 2023 by jllavin77
10
option parser issue enhancement New feature or request
#609 opened Jan 18, 2023 by moritzbuck
1
sqm_reads.pl fails if -p is set to an absolute path instead of a relative one bug Something isn't working sqm_longreads SQM_reads
#586 opened Nov 22, 2022 by fpusan
04.rundiamond.pl error while using sqm_annot.pl
#558 opened Oct 10, 2022 by PuspenduSardar
8
Support for EggNOG version 5.0.2 databases enhancement New feature or request
#506 opened Jun 20, 2022 by mdehollander
2
ProTip! Mix and match filters to narrow down what you’re looking for.